CCAT1 Gene

HGNC Family Non-coding RNAs
Name colon cancer associated transcript 1 (non-protein coding)
Synonyms onco-lncRNA-40, CARLO-5, CARLO5
NCBI Gene ID 100507056
API
Download Associations
Predicted Functions View CCAT1's ARCHS4 Predicted Functions.
Co-expressed Genes View CCAT1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View CCAT1's ARCHS4 Predicted Functions.

Functional Associations

CCAT1 has 202 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.

Click the + buttons to view associations for CCAT1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of CCAT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with CCAT1 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of CCAT1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of CCAT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of CCAT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.