Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles Dataset

Description mRNA expression profiles for breast cancer cell lines measured by microarray
Measurement gene expression by microarray
Association gene-cell line associations by differential expression of gene across cell lines
Category transcriptomics
Resource Heiser et al., PNAS, 2011
Citation(s)
Last Updated
Stats
  1. 15144 genes
  2. 56 cell lines
  3. 196872 gene-cell line associations

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cell line Gene Sets

56 sets of genes with high or low expression in each cell line relative to other cell lines from the Heiser et al., PNAS, 2011 Cell Line Gene Expression Profiles dataset.

Gene Set Description
184A1N4 The 184A1N4 and 184B5 cell lines are nontumorigenic cell lines derived from primary cultures of HMECs that were immortalized with benzo(a)pyrene.
184B5 The 184A1N4 and 184B5 cell lines are nontumorigenic cell lines derived from primary cultures of HMECs that were immortalized with benzo(a)pyrene.
600MPE
AU565
BT20 Human, Caucasian, breast, carcinoma cell line. Morphology: epithelial-like; species: human, Caucasian female 74 years old; tissue: breast; tumor: carcinoma.
BT474
BT483
BT549
CAMA1
HCC1143 disease: primary ductal carcinoma
HCC1187 disease: primary ductal carcinoma
HCC1395
HCC1419 disease: primary ductal carcinoma
HCC1428 disease: adenocarcinoma (mammary gland primary)
HCC1500 disease: primary ductal carcinoma
HCC1569 disease: primary metaplastic carcinoma
HCC1599 disease: primary ductal carcinoma
HCC1806 disease: primary acantholytic squamous cell carcinoma
HCC1937
HCC1954
HCC202 disease: primary ductal carcinoma
HCC2185
HCC2218 disease: primary ductal carcinoma
HCC3153
HCC38
HCC70 disease: primary ductal carcinoma
HS578T
LY2
MCF10A
MCF10F Normal breast epithelial cell line.
MCF12A
MCF7 A immortal human breast-derived cell line cell that has the characteristics: Human cell line derived from breast adenocarcinoma. TKG0479 (Deposited from Tohoku Univ.).
MDAMB134VI disease: ductal carcinoma (mammary gland primary)
MDAMB157 disease: carcinoma (mammary gland primary)
MDAMB175VII
MDAMB231
MDAMB361
MDAMB415 disease: adenocarcinoma (mammary gland primary)
MDAMB436
MDAMB453
MDAMB468
SKBR3 Human breast adenocarcinoma cell line; established from a caucasian female 43 years old. Morphology: epithelial-like.
SUM102PT
SUM1315MO2
SUM149PT
SUM159PT
SUM185PE
SUM225CWN
SUM44PE
SUM52PE
T47D
UACC812 disease: ductal carcinoma
UACC893
ZR751
ZR7530
ZR75B